Detailed information of SNP:
|
SNP ID:
sf0311733027(Gbrowse)
Chromosome: chr03 Position: 11733027 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1341 | 98.96% | 1.04% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 420 | 96.67% | 3.33% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 265 | 96.23% | 3.77% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 62 | 93.55% | 6.45% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0311733027 | G->A | INTERGENIC | None |