Detailed information of SNP:
|
SNP ID:
sf0311735816(Gbrowse)
Chromosome: chr03 Position: 11735816 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1377 | 71.10% | 28.90% |
| All Indica | 764 | 99.61% | 0.39% |
| All Japonica | 494 | 22.06% | 77.94% |
| Aus | 66 | 98.48% | 1.52% |
| Indica I | 356 | 99.16% | 0.84% |
| Indica II | 201 | 100.00% | 0.00% |
| Indica Intermediate | 207 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 92 | 96.74% | 3.26% |
| Japonica Intermediate | 67 | 28.36% | 71.64% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 76.92% | 23.08% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0311735816 | G->A | INTERGENIC | None |