Detailed information of SNP:
|
SNP ID:
sf0311764991(Gbrowse)
Chromosome: chr03 Position: 11764991 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1407 | 83.23% | 16.77% |
| All Indica | 796 | 95.23% | 4.77% |
| All Japonica | 489 | 78.73% | 21.27% |
| Aus | 67 | 1.49% | 98.51% |
| Indica I | 374 | 96.79% | 3.21% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 209 | 89.47% | 10.53% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 90 | 3.33% | 96.67% |
| Japonica Intermediate | 65 | 73.85% | 26.15% |
| Group VI/Aromatic | 13 | 7.69% | 92.31% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0311764991 | C->T | INTERGENIC | None |