Detailed information of SNP:
|
SNP ID:
sf0311833703(Gbrowse)
Chromosome: chr03 Position: 11833703 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1410 | 95.96% | 4.04% |
| All Indica | 799 | 99.75% | 0.25% |
| All Japonica | 491 | 89.61% | 10.39% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 334 | 99.70% | 0.30% |
| Tropical Japonica | 90 | 48.89% | 51.11% |
| Japonica Intermediate | 67 | 94.03% | 5.97% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 89.74% | 10.26% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0311833703 | A->G | INTERGENIC | None |