Detailed information of SNP:
|
SNP ID:
sf0311865558(Gbrowse)
Chromosome: chr03 Position: 11865558 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1350 | 77.41% | 22.59% |
| All Indica | 799 | 98.62% | 1.38% |
| All Japonica | 433 | 33.72% | 66.28% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 98.67% | 1.33% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 289 | 12.11% | 87.89% |
| Tropical Japonica | 86 | 86.05% | 13.95% |
| Japonica Intermediate | 58 | 63.79% | 36.21% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 37 | 81.08% | 18.92% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0311865558 | A->G | INTERGENIC | None |