Detailed information of SNP:
|
SNP ID:
sf0311964311(Gbrowse)
Chromosome: chr03 Position: 11964311 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 95.91% | 4.09% |
| All Indica | 799 | 99.12% | 0.88% |
| All Japonica | 497 | 98.99% | 1.01% |
| Aus | 66 | 39.39% | 60.61% |
| Indica I | 375 | 98.67% | 1.33% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0311964311 | G->A | LOC_Os03g21050(LOC_Os03g21050.1) | INTRON |