Detailed information of SNP:
|
SNP ID:
sf0312019576(Gbrowse)
Chromosome: chr03 Position: 12019576 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 80.13% | 19.87% |
| All Indica | 799 | 99.25% | 0.75% |
| All Japonica | 497 | 57.95% | 42.05% |
| Aus | 67 | 41.79% | 58.21% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 335 | 78.21% | 21.79% |
| Tropical Japonica | 94 | 7.45% | 92.55% |
| Japonica Intermediate | 68 | 27.94% | 72.06% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0312019576 | T->C | LOC_Os03g21110(LOC_Os03g21110.1) | INTRON |