Detailed information of SNP:
|
SNP ID:
sf0312183336(Gbrowse)
Chromosome: chr03 Position: 12183336 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1393 | 80.83% | 19.17% |
| All Indica | 773 | 65.98% | 34.02% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 363 | 68.04% | 31.96% |
| Indica II | 211 | 58.77% | 41.23% |
| Indica Intermediate | 199 | 69.85% | 30.15% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0312183336 | G->A | LOC_Os03g21300(LOC_Os03g21300.1) | Non-Synonymous SNP |