Detailed information of SNP:
|
SNP ID:
sf0312323617(Gbrowse)
Chromosome: chr03 Position: 12323617 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1404 | 80.20% | 19.80% |
| All Indica | 798 | 99.87% | 0.13% |
| All Japonica | 484 | 49.17% | 50.83% |
| Aus | 67 | 89.55% | 10.45% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 212 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 328 | 44.51% | 55.49% |
| Tropical Japonica | 91 | 69.23% | 30.77% |
| Japonica Intermediate | 65 | 44.62% | 55.38% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 41 | 70.73% | 29.27% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0312323617 | T->C | LOC_Os03g21580(LOC_Os03g21580.1) | INTRON |