Detailed information of SNP:
|
SNP ID:
sf0312368490(Gbrowse)
Chromosome: chr03 Position: 12368490 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1411 | 95.82% | 4.18% |
| All Indica | 791 | 92.79% | 7.21% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 369 | 88.35% | 11.65% |
| Indica II | 211 | 98.10% | 1.90% |
| Indica Intermediate | 211 | 95.26% | 4.74% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0312368490 | C->T | INTERGENIC | None |