Detailed information of SNP:
|
SNP ID:
sf0312436623(Gbrowse)
Chromosome: chr03 Position: 12436623 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 56.31% | 43.69% |
| All Indica | 799 | 89.61% | 10.39% |
| All Japonica | 497 | 0.80% | 99.20% |
| Aus | 67 | 88.06% | 11.94% |
| Indica I | 375 | 85.33% | 14.67% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 211 | 89.57% | 10.43% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 45.24% | 54.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0312436623 | A->G | INTERGENIC | None |