Detailed information of SNP:
|
SNP ID:
sf0312484685(Gbrowse)
Chromosome: chr03 Position: 12484685 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1388 | 55.40% | 44.60% |
| All Indica | 792 | 89.65% | 10.35% |
| All Japonica | 494 | 0.20% | 99.80% |
| Aus | 50 | 84.00% | 16.00% |
| Indica I | 371 | 85.44% | 14.56% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 208 | 89.90% | 10.10% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 91 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 38 | 39.47% | 60.53% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0312484685 | A->T | INTERGENIC | None |