Detailed information of SNP:
|
SNP ID:
sf0312485151(Gbrowse)
Chromosome: chr03 Position: 12485151 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 50.85% | 49.15% |
| All Indica | 797 | 88.08% | 11.92% |
| All Japonica | 497 | 0.40% | 99.60% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 374 | 83.42% | 16.58% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 210 | 86.67% | 13.33% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 36.59% | 63.41% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0312485151 | A->T | INTERGENIC | None |