Detailed information of SNP:
|
SNP ID:
sf0312493403(Gbrowse)
Chromosome: chr03 Position: 12493403 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 54.09% | 45.91% |
| All Indica | 798 | 89.10% | 10.90% |
| All Japonica | 497 | 0.20% | 99.80% |
| Aus | 67 | 59.70% | 40.30% |
| Indica I | 375 | 84.80% | 15.20% |
| Indica II | 212 | 98.11% | 1.89% |
| Indica Intermediate | 211 | 87.68% | 12.32% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 33.33% | 66.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0312493403 | T->C | LOC_Os03g21850(LOC_Os03g21850.1) | INTRON |
| sf0312493403 | T->C | LOC_Os03g21850(LOC_Os03g21850.2) | INTRON |