Detailed information of SNP:
|
SNP ID:
sf0312521682(Gbrowse)
Chromosome: chr03 Position: 12521682 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 90.20% | 9.80% |
| All Indica | 799 | 86.73% | 13.27% |
| All Japonica | 496 | 100.00% | 0.00% |
| Aus | 67 | 56.72% | 43.28% |
| Indica I | 375 | 81.60% | 18.40% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 82.46% | 17.54% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0312521682 | T->A | INTERGENIC | None |