Detailed information of SNP:
|
SNP ID:
sf0312532234(Gbrowse)
Chromosome: chr03 Position: 12532234 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 59.03% | 40.97% |
| All Indica | 799 | 97.87% | 2.13% |
| All Japonica | 497 | 1.21% | 98.79% |
| Aus | 67 | 43.28% | 56.72% |
| Indica I | 375 | 98.67% | 1.33% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 211 | 96.68% | 3.32% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 4.26% | 95.74% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 46.34% | 53.66% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0312532234 | A->T | INTERGENIC | None |