Detailed information of SNP:
|
SNP ID:
sf0312559172(Gbrowse)
Chromosome: chr03 Position: 12559172 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 87.84% | 12.16% |
| All Indica | 795 | 86.29% | 13.71% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 66 | 10.61% | 89.39% |
| Indica I | 374 | 81.28% | 18.72% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 208 | 81.25% | 18.75% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0312559172 | C->T | INTERGENIC | None |