Detailed information of SNP:
|
SNP ID:
sf0312619229(Gbrowse)
Chromosome: chr03 Position: 12619229 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1296 | 80.32% | 19.68% |
| All Indica | 684 | 64.62% | 35.38% |
| All Japonica | 496 | 99.40% | 0.60% |
| Aus | 64 | 96.88% | 3.12% |
| Indica I | 340 | 77.35% | 22.65% |
| Indica II | 157 | 40.76% | 59.24% |
| Indica Intermediate | 187 | 61.50% | 38.50% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 93 | 97.85% | 2.15% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 38 | 81.58% | 18.42% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0312619229 | C->A | INTERGENIC | None |