Detailed information of SNP:
|
SNP ID:
sf0312662182(Gbrowse)
Chromosome: chr03 Position: 12662182 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1333 | 74.27% | 25.73% |
| All Indica | 715 | 53.43% | 46.57% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 342 | 60.53% | 39.47% |
| Indica II | 181 | 42.54% | 57.46% |
| Indica Intermediate | 192 | 51.04% | 48.96% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 80.00% | 20.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0312662182 | C->T | LOC_Os03g22100(LOC_Os03g22100.1) | Non-Synonymous SNP |