Detailed information of SNP:
|
SNP ID:
sf0312772859(Gbrowse)
Chromosome: chr03 Position: 12772859 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 88.78% | 11.22% |
| All Indica | 797 | 88.71% | 11.29% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 7.46% | 92.54% |
| Indica I | 375 | 85.87% | 14.13% |
| Indica II | 213 | 92.96% | 7.04% |
| Indica Intermediate | 209 | 89.47% | 10.53% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0312772859 | C->A | INTERGENIC | None |