Detailed information of SNP:
|
SNP ID:
sf0312938901(Gbrowse)
Chromosome: chr03 Position: 12938901 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1381 | 50.25% | 49.75% |
| All Indica | 794 | 23.30% | 76.70% |
| All Japonica | 468 | 87.82% | 12.18% |
| Aus | 66 | 95.45% | 4.55% |
| Indica I | 373 | 13.40% | 86.60% |
| Indica II | 210 | 18.57% | 81.43% |
| Indica Intermediate | 211 | 45.50% | 54.50% |
| Temperate Japonica | 323 | 93.19% | 6.81% |
| Tropical Japonica | 85 | 81.18% | 18.82% |
| Japonica Intermediate | 60 | 68.33% | 31.67% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 39 | 56.41% | 43.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0312938901 | C->T | INTERGENIC | None |