Detailed information of SNP:
|
SNP ID:
sf0312972485(Gbrowse)
Chromosome: chr03 Position: 12972485 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1401 | 71.52% | 28.48% |
| All Indica | 799 | 99.25% | 0.75% |
| All Japonica | 482 | 20.54% | 79.46% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 327 | 6.42% | 93.58% |
| Tropical Japonica | 91 | 58.24% | 41.76% |
| Japonica Intermediate | 64 | 39.06% | 60.94% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 39 | 79.49% | 20.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0312972485 | A->G | INTERGENIC | None |