Detailed information of SNP:
|
SNP ID:
sf0313057633(Gbrowse)
Chromosome: chr03 Position: 13057633 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1328 | 60.99% | 39.01% |
| All Indica | 753 | 91.90% | 8.10% |
| All Japonica | 459 | 15.69% | 84.31% |
| Aus | 65 | 30.77% | 69.23% |
| Indica I | 359 | 92.20% | 7.80% |
| Indica II | 193 | 87.56% | 12.44% |
| Indica Intermediate | 201 | 95.52% | 4.48% |
| Temperate Japonica | 323 | 6.19% | 93.81% |
| Tropical Japonica | 77 | 58.44% | 41.56% |
| Japonica Intermediate | 59 | 11.86% | 88.14% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 37 | 64.86% | 35.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0313057633 | G->A | LOC_Os03g22634(LOC_Os03g22634.1) | INTRON |