Detailed information of SNP:
|
SNP ID:
sf0313062802(Gbrowse)
Chromosome: chr03 Position: 13062802 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1413 | 93.77% | 6.23% |
| All Indica | 794 | 93.32% | 6.68% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 66 | 50.00% | 50.00% |
| Indica I | 373 | 93.30% | 6.70% |
| Indica II | 211 | 90.52% | 9.48% |
| Indica Intermediate | 210 | 96.19% | 3.81% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0313062802 | G->A | LOC_Os03g22634(LOC_Os03g22634.1) | INTRON |