Detailed information of SNP:
|
SNP ID:
sf0313063830(Gbrowse)
Chromosome: chr03 Position: 13063830 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 95.56% | 4.44% |
| All Indica | 798 | 95.24% | 4.76% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 64.18% | 35.82% |
| Indica I | 375 | 92.80% | 7.20% |
| Indica II | 212 | 97.64% | 2.36% |
| Indica Intermediate | 211 | 97.16% | 2.84% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0313063830 | A->G | LOC_Os03g22634(LOC_Os03g22634.1) | INTRON |