Detailed information of SNP:
|
SNP ID:
sf0313122265(Gbrowse)
Chromosome: chr03 Position: 13122265 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1406 | 95.59% | 4.41% |
| All Indica | 788 | 95.18% | 4.82% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 65 | 66.15% | 33.85% |
| Indica I | 370 | 94.86% | 5.14% |
| Indica II | 211 | 98.58% | 1.42% |
| Indica Intermediate | 207 | 92.27% | 7.73% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0313122265 | C->T | LOC_Os03g22720(LOC_Os03g22720.1) | Non-Synonymous SNP |
| sf0313122265 | C->T | LOC_Os03g22720(LOC_Os03g22720.2) | INTRON |
| sf0313122265 | C->T | LOC_Os03g22720(LOC_Os03g22720.3) | INTRON |