Detailed information of SNP:
|
SNP ID:
sf0313127564(Gbrowse)
Chromosome: chr03 Position: 13127564 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 95.56% | 4.44% |
| All Indica | 799 | 95.62% | 4.38% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 61.19% | 38.81% |
| Indica I | 375 | 93.33% | 6.67% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 97.16% | 2.84% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0313127564 | A->G | LOC_Os03g22730(LOC_Os03g22730.1) | Synonymous |