Detailed information of SNP:
|
SNP ID:
sf0313142855(Gbrowse)
Chromosome: chr03 Position: 13142855 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 65.12% | 34.88% |
| All Indica | 799 | 92.37% | 7.63% |
| All Japonica | 497 | 23.74% | 76.26% |
| Aus | 67 | 32.84% | 67.16% |
| Indica I | 375 | 91.20% | 8.80% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 211 | 89.57% | 10.43% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 88.30% | 11.70% |
| Japonica Intermediate | 68 | 47.06% | 52.94% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0313142855 | C->T | INTERGENIC | None |