Detailed information of SNP:
|
SNP ID:
sf0313148113(Gbrowse)
Chromosome: chr03 Position: 13148113 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1386 | 89.25% | 10.75% |
| All Indica | 776 | 99.61% | 0.39% |
| All Japonica | 489 | 72.19% | 27.81% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 366 | 99.45% | 0.55% |
| Indica II | 203 | 100.00% | 0.00% |
| Indica Intermediate | 207 | 99.52% | 0.48% |
| Temperate Japonica | 335 | 68.36% | 31.64% |
| Tropical Japonica | 90 | 90.00% | 10.00% |
| Japonica Intermediate | 64 | 67.19% | 32.81% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 90.00% | 10.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0313148113 | A->G | INTERGENIC | None |