Detailed information of SNP:
|
SNP ID:
sf0313174531(Gbrowse)
Chromosome: chr03 Position: 13174531 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1343 | 93.08% | 6.92% |
| All Indica | 741 | 92.85% | 7.15% |
| All Japonica | 486 | 99.79% | 0.21% |
| Aus | 62 | 38.71% | 61.29% |
| Indica I | 356 | 92.70% | 7.30% |
| Indica II | 199 | 93.97% | 6.03% |
| Indica Intermediate | 186 | 91.94% | 8.06% |
| Temperate Japonica | 330 | 100.00% | 0.00% |
| Tropical Japonica | 90 | 98.89% | 1.11% |
| Japonica Intermediate | 66 | 100.00% | 0.00% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0313174531 | A->G | INTERGENIC | None |