Detailed information of SNP:
|
SNP ID:
sf0313175121(Gbrowse)
Chromosome: chr03 Position: 13175121 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 63.78% | 36.22% |
| All Indica | 799 | 90.74% | 9.26% |
| All Japonica | 497 | 25.15% | 74.85% |
| Aus | 67 | 11.94% | 88.06% |
| Indica I | 375 | 88.80% | 11.20% |
| Indica II | 213 | 94.37% | 5.63% |
| Indica Intermediate | 211 | 90.52% | 9.48% |
| Temperate Japonica | 335 | 5.07% | 94.93% |
| Tropical Japonica | 94 | 84.04% | 15.96% |
| Japonica Intermediate | 68 | 42.65% | 57.35% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0313175121 | G->A | INTERGENIC | None |