Detailed information of SNP:
|
SNP ID:
sf0313177446(Gbrowse)
Chromosome: chr03 Position: 13177446 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 66.48% | 33.52% |
| All Indica | 798 | 94.99% | 5.01% |
| All Japonica | 496 | 25.40% | 74.60% |
| Aus | 67 | 14.93% | 85.07% |
| Indica I | 375 | 93.33% | 6.67% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 210 | 95.24% | 4.76% |
| Temperate Japonica | 335 | 5.07% | 94.93% |
| Tropical Japonica | 93 | 84.95% | 15.05% |
| Japonica Intermediate | 68 | 44.12% | 55.88% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0313177446 | A->G | INTERGENIC | None |