Detailed information of SNP:
|
SNP ID:
sf0313191169(Gbrowse)
Chromosome: chr03 Position: 13191169 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1404 | 96.87% | 3.13% |
| All Indica | 795 | 99.37% | 0.63% |
| All Japonica | 487 | 92.61% | 7.39% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 98.66% | 1.34% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 209 | 100.00% | 0.00% |
| Temperate Japonica | 333 | 94.59% | 5.41% |
| Tropical Japonica | 93 | 93.55% | 6.45% |
| Japonica Intermediate | 61 | 80.33% | 19.67% |
| Group VI/Aromatic | 13 | 84.62% | 15.38% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0313191169 | C->T | INTERGENIC | None |