Detailed information of SNP:
|
SNP ID:
sf0313201781(Gbrowse)
Chromosome: chr03 Position: 13201781 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1410 | 89.93% | 10.07% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 490 | 77.14% | 22.86% |
| Aus | 67 | 79.10% | 20.90% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 96.42% | 3.58% |
| Tropical Japonica | 91 | 25.27% | 74.73% |
| Japonica Intermediate | 64 | 50.00% | 50.00% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 40 | 90.00% | 10.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0313201781 | C->T | INTERGENIC | None |