Detailed information of SNP:
|
SNP ID:
sf0313205761(Gbrowse)
Chromosome: chr03 Position: 13205761 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1407 | 71.93% | 28.07% |
| All Indica | 793 | 96.72% | 3.28% |
| All Japonica | 497 | 28.17% | 71.83% |
| Aus | 61 | 93.44% | 6.56% |
| Indica I | 373 | 96.51% | 3.49% |
| Indica II | 212 | 97.17% | 2.83% |
| Indica Intermediate | 208 | 96.63% | 3.37% |
| Temperate Japonica | 335 | 4.48% | 95.52% |
| Tropical Japonica | 94 | 87.23% | 12.77% |
| Japonica Intermediate | 68 | 63.24% | 36.76% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0313205761 | T->C | INTERGENIC | None |