Detailed information of SNP:
|
SNP ID:
sf0313206948(Gbrowse)
Chromosome: chr03 Position: 13206948 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1325 | 95.40% | 4.60% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 419 | 88.54% | 11.46% |
| Aus | 60 | 90.00% | 10.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 327 | 98.47% | 1.53% |
| Tropical Japonica | 51 | 41.18% | 58.82% |
| Japonica Intermediate | 41 | 68.29% | 31.71% |
| Group VI/Aromatic | 9 | 77.78% | 22.22% |
| Intermediate | 38 | 86.84% | 13.16% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0313206948 | G->T | LOC_Os03g22850(LOC_Os03g22850.1) | Synonymous |