Detailed information of SNP:
|
SNP ID:
sf0313424310(Gbrowse)
Chromosome: chr03 Position: 13424310 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1354 | 92.84% | 7.16% |
| All Indica | 799 | 99.87% | 0.13% |
| All Japonica | 449 | 80.85% | 19.15% |
| Aus | 61 | 95.08% | 4.92% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 325 | 96.31% | 3.69% |
| Tropical Japonica | 74 | 33.78% | 66.22% |
| Japonica Intermediate | 50 | 50.00% | 50.00% |
| Group VI/Aromatic | 6 | 66.67% | 33.33% |
| Intermediate | 39 | 87.18% | 12.82% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0313424310 | C->T | INTERGENIC | None |