Detailed information of SNP:
|
SNP ID:
sf0313436389(Gbrowse)
Chromosome: chr03 Position: 13436389 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1380 | 97.75% | 2.25% |
| All Indica | 783 | 97.96% | 2.04% |
| All Japonica | 478 | 98.54% | 1.46% |
| Aus | 66 | 90.91% | 9.09% |
| Indica I | 367 | 99.73% | 0.27% |
| Indica II | 206 | 93.69% | 6.31% |
| Indica Intermediate | 210 | 99.05% | 0.95% |
| Temperate Japonica | 333 | 99.40% | 0.60% |
| Tropical Japonica | 80 | 93.75% | 6.25% |
| Japonica Intermediate | 65 | 100.00% | 0.00% |
| Group VI/Aromatic | 13 | 92.31% | 7.69% |
| Intermediate | 40 | 97.50% | 2.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0313436389 | T->C | LOC_Os03g23220(LOC_Os03g23220.1) | Synonymous |