Detailed information of SNP:
|
SNP ID:
sf0313458384(Gbrowse)
Chromosome: chr03 Position: 13458384 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1396 | 71.20% | 28.80% |
| All Indica | 782 | 94.88% | 5.12% |
| All Japonica | 493 | 28.80% | 71.20% |
| Aus | 66 | 96.97% | 3.03% |
| Indica I | 361 | 95.57% | 4.43% |
| Indica II | 212 | 95.75% | 4.25% |
| Indica Intermediate | 209 | 92.82% | 7.18% |
| Temperate Japonica | 335 | 6.27% | 93.73% |
| Tropical Japonica | 92 | 84.78% | 15.22% |
| Japonica Intermediate | 66 | 65.15% | 34.85% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 41 | 82.93% | 17.07% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0313458384 | C->T | INTERGENIC | None |