Detailed information of SNP:
|
SNP ID:
sf0313462404(Gbrowse)
Chromosome: chr03 Position: 13462404 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 72.28% | 27.72% |
| All Indica | 795 | 95.85% | 4.15% |
| All Japonica | 496 | 29.64% | 70.36% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 373 | 95.44% | 4.56% |
| Indica II | 213 | 95.77% | 4.23% |
| Indica Intermediate | 209 | 96.65% | 3.35% |
| Temperate Japonica | 335 | 6.57% | 93.43% |
| Tropical Japonica | 94 | 88.30% | 11.70% |
| Japonica Intermediate | 67 | 62.69% | 37.31% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0313462404 | A->G | LOC_Os03g23760(LOC_Os03g23760.1) | Non-Synonymous SNP |