Detailed information of SNP:
|
SNP ID:
sf0313616175(Gbrowse)
Chromosome: chr03 Position: 13616175 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 88.91% | 11.09% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 494 | 72.06% | 27.94% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 92.84% | 7.16% |
| Tropical Japonica | 91 | 23.08% | 76.92% |
| Japonica Intermediate | 68 | 35.29% | 64.71% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0313616175 | G->A | LOC_Os03g23990(LOC_Os03g23990.1) | Non-Synonymous SNP |