Detailed information of SNP:
|
SNP ID:
sf0313655029(Gbrowse)
Chromosome: chr03 Position: 13655029 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 71.46% | 28.54% |
| All Indica | 799 | 79.22% | 20.78% |
| All Japonica | 497 | 69.01% | 30.99% |
| Aus | 67 | 14.93% | 85.07% |
| Indica I | 375 | 90.13% | 9.87% |
| Indica II | 213 | 50.70% | 49.30% |
| Indica Intermediate | 211 | 88.63% | 11.37% |
| Temperate Japonica | 335 | 93.73% | 6.27% |
| Tropical Japonica | 94 | 11.70% | 88.30% |
| Japonica Intermediate | 68 | 26.47% | 73.53% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0313655029 | G->A | INTERGENIC | None |