Detailed information of SNP:
|
SNP ID:
sf0313657918(Gbrowse)
Chromosome: chr03 Position: 13657918 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1402 | 96.50% | 3.50% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 482 | 90.46% | 9.54% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 334 | 99.40% | 0.60% |
| Tropical Japonica | 84 | 54.76% | 45.24% |
| Japonica Intermediate | 64 | 90.62% | 9.38% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 92.50% | 7.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0313657918 | T->C | INTERGENIC | None |