Detailed information of SNP:
|
SNP ID:
sf0313677214(Gbrowse)
Chromosome: chr03 Position: 13677214 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1407 | 61.05% | 38.95% |
| All Indica | 789 | 80.99% | 19.01% |
| All Japonica | 497 | 30.58% | 69.42% |
| Aus | 66 | 36.36% | 63.64% |
| Indica I | 374 | 89.84% | 10.16% |
| Indica II | 205 | 57.07% | 42.93% |
| Indica Intermediate | 210 | 88.57% | 11.43% |
| Temperate Japonica | 335 | 6.57% | 93.43% |
| Tropical Japonica | 94 | 88.30% | 11.70% |
| Japonica Intermediate | 68 | 69.12% | 30.88% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 73.17% | 26.83% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0313677214 | T->C | INTERGENIC | None |