Detailed information of SNP:
|
SNP ID:
sf0313717019(Gbrowse)
Chromosome: chr03 Position: 13717019 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 56.70% | 43.30% |
| All Indica | 799 | 26.91% | 73.09% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 66 | 87.88% | 12.12% |
| Indica I | 375 | 22.40% | 77.60% |
| Indica II | 213 | 41.78% | 58.22% |
| Indica Intermediate | 211 | 19.91% | 80.09% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0313717019 | G->A | INTERGENIC | None |