Detailed information of SNP:
|
SNP ID:
sf0313791216(Gbrowse)
Chromosome: chr03 Position: 13791216 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1387 | 86.66% | 13.34% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 471 | 64.97% | 35.03% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 325 | 81.85% | 18.15% |
| Tropical Japonica | 86 | 12.79% | 87.21% |
| Japonica Intermediate | 60 | 48.33% | 51.67% |
| Group VI/Aromatic | 13 | 15.38% | 84.62% |
| Intermediate | 37 | 75.68% | 24.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0313791216 | A->G | INTERGENIC | None |