Detailed information of SNP:
|
SNP ID:
sf0313851732(Gbrowse)
Chromosome: chr03 Position: 13851732 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1330 | 89.92% | 10.08% |
| All Indica | 719 | 85.81% | 14.19% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 58 | 46.55% | 53.45% |
| Indica I | 318 | 77.67% | 22.33% |
| Indica II | 211 | 98.10% | 1.90% |
| Indica Intermediate | 190 | 85.79% | 14.21% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0313851732 | G->T | LOC_Os03g24339(LOC_Os03g24339.1) | INTRON |