Detailed information of SNP:
|
SNP ID:
sf0313929653(Gbrowse)
Chromosome: chr03 Position: 13929653 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 69.42% | 30.58% |
| All Indica | 799 | 99.75% | 0.25% |
| All Japonica | 496 | 22.78% | 77.22% |
| Aus | 67 | 76.12% | 23.88% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 31.94% | 68.06% |
| Tropical Japonica | 93 | 2.15% | 97.85% |
| Japonica Intermediate | 68 | 5.88% | 94.12% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 40 | 52.50% | 47.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0313929653 | A->G | LOC_Os03g24450(LOC_Os03g24450.1) | INTRON |