Detailed information of SNP:
|
SNP ID:
sf0313956959(Gbrowse)
Chromosome: chr03 Position: 13956959 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1385 | 66.57% | 33.43% |
| All Indica | 781 | 98.72% | 1.28% |
| All Japonica | 495 | 21.41% | 78.59% |
| Aus | 53 | 47.17% | 52.83% |
| Indica I | 364 | 99.45% | 0.55% |
| Indica II | 211 | 97.16% | 2.84% |
| Indica Intermediate | 206 | 99.03% | 0.97% |
| Temperate Japonica | 334 | 29.94% | 70.06% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 67 | 7.46% | 92.54% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 45.24% | 54.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0313956959 | T->C | LOC_Os03g24490(LOC_Os03g24490.1) | Non-Synonymous SNP |