Detailed information of SNP:
|
SNP ID:
sf0313964854(Gbrowse)
Chromosome: chr03 Position: 13964854 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1219 | 90.98% | 9.02% |
| All Indica | 610 | 82.46% | 17.54% |
| All Japonica | 496 | 100.00% | 0.00% |
| Aus | 64 | 96.88% | 3.12% |
| Indica I | 288 | 79.17% | 20.83% |
| Indica II | 171 | 88.89% | 11.11% |
| Indica Intermediate | 151 | 81.46% | 18.54% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 36 | 97.22% | 2.78% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0313964854 | C->T | INTERGENIC | None |